Publications

A Model Eye for fluorescent characterization of retinal cultures and tissues

Scientific Reports volume 13, Article number: 10983 (2023)

G. Ferraro, Y. Gigante, M. Pitea, L. Mautone, G. Ruocco, S. Di Angelantonio, and M. Leonetti.

Computational evidences of a misfolding event in an aggregation-prone light chain preceding the formation of the non-native pathogenic dimer

Proteins: Structure Function and Bioinformatics 2024

F. Desantis, M. Miotto, E. Milanetti, G. Ruocco, and L. Di Rienzo.

Computational structural-based GPCR optimization for user-defined ligand: implications for the development of biosensors

Comput Struct Biotechnol J. 2023; 21: 3002–3009.

L. Di Rienzo, M. Miotto, E. Milanetti, and G. Ruocco.

Design of protein-binding peptides with controlled binding affinity: the case of SARS-CoV-2 receptor binding domain and ACE2-derived peptides

Front Mol Biosci. 2023; 10: 1332359.

G. Parisi, R. Piacentini, A. Incocciati, A. Bonamore, A. Macone, J. Rupert, E. Zacco, M. Miotto, E. Milanetti, G. G. Tartaglia, G. Ruocco, A. Boffi, and L. Di Rienzo.

Differences in the organization of interface residues tunes the stability of the SARS-CoV-2 spike-ACE2 complex

Front. Mol. Biosci., 27 June 2023

M. Miotto; L. Di Rienzo; G. Grassmann; F. Desantis; G. Cidonio; G. Gosti; M. Leonetti; G. Ruocco; E. Milanetti

Electrostatic complementarity at the interface drives transient protein-protein interactions

Scientific Reports volume 13, Article number: 10207 (2023)

G. Grassmann, L. Di Rienzo, G. Gosti, M. Leonetti, G. Ruocco, M. Miotto, and E. Milanetti.

Molecular dynamics analysis of Superoxide Dismutase 1 mutations suggests decoupling between mechanisms underlying ALS onset and progression

Comput Struct Biotechnol J. 2023; 21: 5296–5308

M. Kalia, M. Miotto, ..., G. Ruocco, E. Milanetti, R. Dobson, A. Al Chalabi, and A. Iacoangeli.

Prediction of protein-RNA interactions from single-cell transcriptomic data

Nucleic Acids Research, Volume 52, Issue 6, 12 April 2024, Page e31,

J. Fiorentino, A. Armaos, A. Colantoni, G. G. Tartaglia

Progressive alteration of murine bladder elasticity in actinic cystitis detected by Brillouin microscopy

Scientific Reports volume 14, Article number: 484 (2024)

L. Martinez-Vidal, C. Testi, E. Pontecorvo, F. Pederzoli, E. Alchera, I. Locatelli, C. Venegoni, A. Spinelli, R. Lucianò, A. Salonia, A. Podestà, G. Ruocco & M. Alfano

RNA sequestration driven by amyloid formation: the alpha synuclein case

Nucleic Acids Research, Volume 51, Issue 21, 27 November 2023, Pages 11466–11478

J. Rupert, M. Monti, E. Zacco, G. G. Tartaglia

Reference-less wavefront shaping in an Hopfield-like rough intensity landscape

Optics Express Vol. 31, Issue 18, pp. 28987-28998 (2023)

M. Leonetti; L. Leuzzi; G. Ruocco

Retinal Fingerprints of ALS in Patients: Ganglion Cell Apoptosis and TDP-43/p62 Misplacement.

Front Aging Neurosci. 2023; 15: 1110520

Pediconi, N.; Gigante, Y.; Cama, S.; Pitea, M.; Mautone, L.; Ruocco, G.; Ghirga, S.; Di Angelantonio, S.

Two receptor binding strategy of SARS-CoV-2 is mediated by both the N-terminal and receptor-binding spike domain

J. Phys. Chem. B 2024, 128, 2, 451–464

M. Monti, E. Milanetti, M. T. Frans, M. Miotto, L. DiRienzo, M. V. Baranov, G. Gosti, A. K. Somavarapu, M. Nagaraj, T. W. Golbeck, E. Rossing, S. J. Moons, T. J. Boltje, G. van der Bogaart,..., G. G. Tartaglia, G.

Collective behavior and self-organization in neural rosette morphogenesis

Front Cell Dev Biol. 2023; 11: 1134091.

M. Miotto, M. Rosito, M. Paoluzi, V. de Turris, V. Folli, M. Leonetti, G. Ruocco, A. Rosa, and G. Gosti.

May the force be with you: Nuclear condensates function beyond transcription control: Potential nongenetic functions of nuclear condensates in physiological and pathological conditions

BioEssays 2023

Negri M. L., D'Annunzio S., Vitali G., Zippo A.